PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca25159.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family NAC
Protein Properties Length: 294aa    MW: 32874.2 Da    PI: 8.8523
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca25159.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM96.44.5e-3078452128
         NAM  52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                 +++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+   + +glkk+Lvfy+gra kg ktdW+mhe+rl
  Dca25159.1   7 STGEKEWYFYCPRDRKYRNSARPNRVTCAGFWKATGTDRPIYSSeAAKCIGLKKSLVFYRGRAAKGIKTDWMMHEFRL 84 
                 45789**************************************855566***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100537.6371116IPR003441NAC domain
SuperFamilySSF1019413.14E-337116IPR003441NAC domain
PfamPF023651.6E-121284IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MQAELASTGE KEWYFYCPRD RKYRNSARPN RVTCAGFWKA TGTDRPIYSS EAAKCIGLKK  60
SLVFYRGRAA KGIKTDWMMH EFRLPSLSDS SGPPKKLFDK TLPANDSWAI CRIFKKTNSM  120
AQRALSHSWI SPLPEIHPIS DMFSNVPNHT AAHHISPENI SCTTDHLHGT PSTESFNHVI  180
SRADLPTNLM FPTADMIAVP RSTPEVSSML LNLSPAFTND AAKPTDVLGF GVSQHQFNGF  240
PVADDQFYFR KIQNQIWNNS TRSIGFPTTL SSWDSSVPCP SELSTSISSN KCYL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-33611966168NO APICAL MERISTEM PROTEIN
1ut4_B4e-33611966168NO APICAL MERISTEM PROTEIN
1ut7_A4e-33611966168NO APICAL MERISTEM PROTEIN
1ut7_B4e-33611966168NO APICAL MERISTEM PROTEIN
3swm_A5e-33611969171NAC domain-containing protein 19
3swm_B5e-33611969171NAC domain-containing protein 19
3swm_C5e-33611969171NAC domain-containing protein 19
3swm_D5e-33611969171NAC domain-containing protein 19
3swp_A5e-33611969171NAC domain-containing protein 19
3swp_B5e-33611969171NAC domain-containing protein 19
3swp_C5e-33611969171NAC domain-containing protein 19
3swp_D5e-33611969171NAC domain-containing protein 19
4dul_A4e-33611966168NAC domain-containing protein 19
4dul_B4e-33611966168NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010693234.11e-125PREDICTED: putative NAC domain-containing protein 94
SwissprotQ9ZVH01e-66FEZ_ARATH; Protein FEZ
TrEMBLA0A0K9QFK81e-128A0A0K9QFK8_SPIOL; Uncharacterized protein
STRINGPOPTR_0017s11830.11e-102(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.18e-68NAC family protein